Write a Bible study. Read the Bible and view and edit your notes, filling in the details until you have a complete study. See the help on the Chapters page to learn about reading and taking notes, but notice that from that page you always tie notes to the chapter or book you're reading and tying notes to a study is optional, but when you write a study from this page you always tie notes to the study you're writing and the chapter is optional. This is why the Notes panel looks a bit different here then it does on the Chapters page.
To include a Bible passage in your study text find the passage using the Chapters panel, from this page or from any page that has a Chapters panel, then copy and paste the passage into your study. This way you pick up any text annotations that the Generate page needs to format PDFs. For example, italicized words have square brackets around them in the Chapters panel, and they're removed and replaced with italics in the PDF. Also, if you want a passage with self-pronunciation marks or POS tags then request that in the Chapters panel to get the annotations, and copy and paste as usual. The Generate tool can remove annotations you don't want in a particular PDF, but it can't add any that you haven't already put into the text.
From this page you don't have direct access to the Concordance or Context search tools, but you can open them in separate browser windows or tabs. Any changes to your notes that you save from one page will appear in every other page.
When the study's ready, use the Generate page to turn it into PDFs. If the study has a description, that's used as the title in PDFs, otherwise the study ID is the title.